##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index13_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	21035017	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.910008059418256	33.0	31.0	34.0	30.0	34.0
2	32.000578891854474	33.0	31.0	34.0	30.0	34.0
3	32.05319962422659	34.0	31.0	34.0	30.0	34.0
4	35.51558741312165	37.0	35.0	37.0	33.0	37.0
5	35.52049128365335	37.0	35.0	37.0	33.0	37.0
6	35.522827625953425	37.0	35.0	37.0	33.0	37.0
7	35.438553199172595	37.0	35.0	37.0	33.0	37.0
8	35.437996460853824	37.0	35.0	37.0	33.0	37.0
9	36.962455604385774	39.0	37.0	39.0	33.0	39.0
10-14	37.35604477999709	39.2	37.2	39.4	33.0	39.4
15-19	38.4116044213323	40.0	38.0	41.0	33.2	41.0
20-24	38.227128440162424	40.0	38.0	41.0	33.2	41.0
25-29	38.13444072804886	40.0	38.0	41.0	33.0	41.0
30-34	38.0314582488809	40.0	38.0	41.0	33.0	41.0
35-39	37.80463029813572	40.0	37.0	41.0	32.6	41.0
40-44	37.42488290834279	39.6	36.4	41.0	31.4	41.0
45-49	37.00030367458224	39.0	35.4	41.0	30.8	41.0
50-54	36.18294477251908	38.2	34.6	40.0	29.8	40.6
55-59	36.05356317040296	38.0	34.6	40.0	29.4	41.0
60-64	35.53402186458894	37.0	34.0	40.0	28.8	41.0
65-69	35.037338814606144	35.8	34.0	39.2	29.0	41.0
70-74	34.22963412865319	35.0	33.8	38.0	28.4	40.4
75-79	33.35989262095676	35.0	33.0	36.6	27.2	39.0
80-84	32.538707337388885	35.0	33.0	35.6	26.2	37.2
85-89	31.68700539676293	35.0	32.2	35.0	25.0	36.2
90	31.1851515023734	35.0	32.0	35.0	24.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	150.0
11	1774.0
12	5377.0
13	10739.0
14	17290.0
15	24012.0
16	30075.0
17	35566.0
18	41459.0
19	48900.0
20	58042.0
21	68965.0
22	81946.0
23	99697.0
24	122005.0
25	149908.0
26	185882.0
27	229996.0
28	282247.0
29	342531.0
30	422835.0
31	529023.0
32	670656.0
33	872419.0
34	1187391.0
35	1711692.0
36	2639215.0
37	3923817.0
38	4462590.0
39	2689914.0
40	88904.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	27.302134607269156	12.145220063507029	9.994778709244097	50.55786661997972
2	22.239803974604712	19.03654326283962	35.53864126495994	23.18501149759573
3	25.919238528486105	21.232584864980414	22.485314236859473	30.36286236967401
4	27.922914858274506	27.965720227880773	18.909792964489043	25.20157194935567
5	29.349383826765706	30.203122018105326	21.098964443089553	19.348529712039415
6	24.160901429892377	32.91920712578932	21.494573573123244	21.425317871195062
7	21.338722135584064	18.765988170159584	37.42574904630797	22.469540647948378
8	21.444273172837885	22.030498630714085	29.056087466548224	27.469140729899806
9	21.835773619974734	20.92918562747342	31.208765248376718	26.02627550417513
10-14	24.56655793563974	26.259123688941834	24.616374027771386	24.55794434764704
15-19	24.953297698404167	25.114292756388227	25.051352791580317	24.88105675362729
20-24	24.719683166060427	25.371480858155916	25.387433645375275	24.521402330408385
25-29	24.573543526861986	25.416575527382225	25.317842161238907	24.692038784516885
30-34	24.601272276367688	25.339998915857777	25.289266156184198	24.769462651590338
35-39	24.569964120203323	25.489823496905778	25.260893645950794	24.679318736940104
40-44	24.55290117622745	25.331616905933174	25.408769988563396	24.70671192927598
45-49	24.492727275977668	25.380351368838916	25.32825554089077	24.79866581429264
50-54	24.524659402023076	25.477257070597766	25.36621100830431	24.631872519074847
55-59	24.54313157525761	25.39646063665897	25.322361709751775	24.738046078331646
60-64	24.42910211171846	25.422545282761227	25.443576315920595	24.704776289599714
65-69	24.462831261947176	25.531140356432154	25.44494876198911	24.56107961963156
70-74	24.490424375796284	25.48646127314821	25.34228526479778	24.68082908625772
75-79	24.501636130881344	25.422672849126826	25.427189133230954	24.64850188676088
80-84	24.421726406005597	25.539417550228727	25.461749200765254	24.577106843000426
85-89	24.51744362372224	25.52052559241737	25.368838890084323	24.593191893776066
90	24.261467662451967	25.603964593786355	25.586516973373175	24.548050770388507
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.86000122724887
2	45.42481547220044
3	56.28210089816012
4	53.12448680763018
5	48.69791353880512
6	45.58621930108744
7	43.80826278353244
8	48.91341390273769
9	47.86204912414986
10-14	49.12450228328678
15-19	49.834354452031455
20-24	49.24108549646881
25-29	49.26558231137887
30-34	49.370734927958026
35-39	49.24928285714343
40-44	49.25961310550343
45-49	49.29139309027031
50-54	49.15653192109792
55-59	49.28117765358926
60-64	49.13387840131818
65-69	49.023910881578736
70-74	49.17125346205401
75-79	49.15013801764222
80-84	48.998833249006026
85-89	49.1106355174983
90	48.80951843284047
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	21.0
1	20.0
2	19.5
3	19.0
4	31.5
5	48.0
6	58.5
7	90.5
8	118.0
9	151.5
10	182.0
11	206.5
12	270.0
13	392.5
14	572.0
15	905.0
16	1473.0
17	2283.5
18	3738.0
19	6487.0
20	8261.0
21	11137.5
22	18415.5
23	29326.0
24	44258.5
25	64270.0
26	90114.5
27	121444.0
28	156117.5
29	193202.5
30	212687.0
31	231133.5
32	271374.0
33	316987.5
34	366688.5
35	415723.0
36	465246.5
37	522048.0
38	573366.0
39	614913.5
40	635574.0
41	649426.0
42	677399.5
43	704651.5
44	721732.0
45	727346.5
46	728115.0
47	724976.0
48	721925.5
49	721268.0
50	721418.0
51	713355.5
52	706324.0
53	695918.5
54	687803.5
55	688787.0
56	679561.5
57	662694.0
58	639715.0
59	611955.5
60	597195.0
61	581027.0
62	546933.5
63	503883.5
64	451889.5
65	400478.0
66	349287.5
67	294478.5
68	243495.0
69	196883.5
70	173095.0
71	151930.0
72	113651.5
73	82866.5
74	56197.0
75	34556.5
76	20391.5
77	11166.0
78	5480.0
79	2453.0
80	1409.0
81	1046.0
82	502.0
83	259.5
84	156.5
85	102.0
86	75.5
87	57.0
88	41.0
89	28.0
90	26.0
91	22.0
92	15.5
93	15.5
94	13.0
95	7.0
96	5.5
97	3.0
98	1.0
99	2.0
100	3.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.2913047324848846
2	0.22208681837528346
3	0.2784832548507092
4	0.3011597280857914
5	0.25780345221494233
6	0.17125728968985382
7	0.21897296303587488
8	0.24460165637137352
9	0.22754913865769638
10-14	0.20253656082141508
15-19	0.17698868510541257
20-24	0.20477283189264833
25-29	0.03649913855548583
30-34	0.0041663859839048386
35-39	0.005052527411791491
40-44	0.009637263426029084
45-49	0.012467781699439557
50-54	0.007526497363895641
55-59	0.0046313249948882855
60-64	0.010881854766269027
65-69	0.00560684120198239
70-74	1.5783205689826635E-4
75-79	1.1884944043544152E-4
80-84	0.0033696193352256384
85-89	0.0016410730735325766
90	0.0029950058989731266
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.1035017E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.63800562457181
#Duplication Level	Relative count
1	100.0
2	30.50118838483001
3	15.492404670869071
4	9.678619406840964
5	6.484447659398574
6	4.794874444559264
7	3.7625297096207504
8	3.1125348765113157
9	2.523509352071923
10++	30.325514105611244
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	5517315	3.0014088	4.617564	2
CCAGG	4417615	2.586085	5.056497	1
CCTGG	4385625	2.5577755	5.949946	1
GAAGA	4384750	2.5120392	5.036464	2
CTTCT	4542960	2.4971101	5.3830967	1
CTGGA	4169920	2.405869	8.764729	1
TCCAG	4109980	2.3357618	5.5990252	2
CTCCT	4106640	2.2903192	7.3785725	1
CTGGG	3780240	2.2382352	8.2587185	1
CAGGA	3838780	2.2231128	5.548266	1
CTTCA	3959850	2.1847486	5.8031707	1
CTCCA	3855785	2.158471	8.013168	1
CCCAG	3731995	2.1519916	7.0645876	1
CAGAA	3663290	2.0672712	5.0791597	1
CTCTG	3524535	1.9955685	6.1280985	1
CTGGC	3234805	1.8865967	5.421403	1
TGGAA	3228520	1.8427271	5.2913966	2
CTGAA	3229060	1.8154248	5.2656527	1
CTCAG	3030270	1.7221467	6.2230587	1
CTTGG	2829155	1.6262115	5.4051204	1
>>END_MODULE
